fc80bc8d663f3999394cdcc608a237405cc77442,mahotas/demos/nuclear_distance_watershed.py,,,#,6

Before Change

import numpy as np
from matplotlib import pyplot as plt

try:
    nuclear_path = path.join(
                    path.dirname(path.abspath(__file__)),
                    "data",
                    "nuclear.png")
except NameError:
    nuclear_path = path.join("data", "nuclear.png")

nuclear = mahotas.imread(nuclear_path)
nuclear = nuclear[:,:,0]
nuclear = mahotas.gaussian_filter(nuclear, 1.)
threshed  = (nuclear > nuclear.mean())

After Change

import numpy as np
from matplotlib import pyplot as plt

nuclear = mh.demos.load("nuclear")
nuclear = nuclear[:,:,0]
nuclear = mh.gaussian_filter(nuclear, 1.)
threshed  = (nuclear > nuclear.mean())
distances = mh.stretch(mh.distance(threshed))

Instances