05399c5856736751995ed5514db68ef24b034aba,src/biotite/sequence/align/alignment.py,Alignment,__getitem__,#Alignment#Any#,131

Before Change

    
    def __getitem__(self, index):
        if isinstance(index, tuple):
            return Alignment(self.sequences[index[1]], self.trace[index],
                             self.score)
        elif isinstance(index, slice):
            return Alignment(self.sequences[:], self.trace[index], self.score)
        else:
            raise IndexError("Invalid alignment index")

After Change

        if isinstance(index, tuple):
            new_trace = self.trace[index]
            if isinstance(index[1], (list, tuple, np.ndarray)):
                new_sequences = [self.sequences[i] for i in index[1]]
            else:
                new_sequences = self.sequences[index[1]]
            return Alignment(new_sequences, new_trace, self.score)
        elif isinstance(index, slice):
            return Alignment(self.sequences[:], self.trace[index], self.score)
        else:
            raise IndexError("Invalid alignment index")

Instances