ce579cf021ca1ee0705bd9484aae55e0d110d0e7,cnvlib/commands.py,,batch_make_reference,#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#,123

Before Change

            tgt_fname = sample_pfx + ".targetcoverage.cnn"
            pool.apply_async(batch_write_coverage,
                             (target_bed, nbam, tgt_fname, by_count))
            target_fnames.append(tgt_fname)
            anti_fname = sample_pfx + ".antitargetcoverage.cnn"
            pool.apply_async(batch_write_coverage,
                             (antitarget_bed, nbam, anti_fname, by_count))
            antitarget_fnames.append(anti_fname)

After Change

                sample_id = core.fbase(nbam)
                sample_pfx = os.path.join(output_dir, sample_id)
                tgt_futures.append(
                    pool.submit(batch_write_coverage,
                                target_bed, nbam,
                                sample_pfx + ".targetcoverage.cnn",
                                by_count))
                anti_futures.append(
                    pool.submit(batch_write_coverage,
                                antitarget_bed, nbam,

Instances