aadd7d651389f213aaf33b08ab6f533a3ecc59db,cellprofiler/modules/correctilluminationcalculate.py,CorrectIlluminationCalculate,preprocess_image_for_averaging,#CorrectIlluminationCalculate#Any#,593

Before Change

        if (self.intensity_choice == IC_REGULAR or 
            self.smoothing_method == SM_SPLINES):
            if orig_image.has_mask:
                pixels[np.logical_not(orig_image.mask)] = 0
                avg_image = cpi.Image(pixels, parent_image = orig_image)
            else:
                avg_image = orig_image

After Change

                minima = fix(scind.minimum(pixels, labels, indexes))
                min_block[labels != -1] = minima[labels[labels != -1]]
            else:
                for i in range(pixels.shape[2]):
                    minima = fix(scind.minimum(pixels[:,:,i], labels, indexes))
                    min_block[labels != -1, i] = minima[labels[labels != -1]]
            avg_image = cpi.Image(min_block, parent_image = orig_image)
        return avg_image
        
    def apply_smoothing(self, image, orig_image=None):

Instances