ac052d8737d28287040445e119b1d8c8d8cd1519,doc/examples/scripts/sequence/lexa_conservation.py,,,#,64

Before Change


vis = graphics.AlignmentSimilarityVisualizer(alignment[:,:20])
vis.set_alignment_properties(symbols_per_line=25)
vis.add_labels(labels=sources[:20], size=250)
figure = vis.generate()

////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
// Finally we can generate our sequence logo.

After Change


    ax, alignment[:,:20], labels=sources[:20], symbols_per_line=len(alignment)
)
// Source names in italic
ax.set_yticklabels(ax.get_yticklabels(), fontdict={"fontstyle":"italic"})
fig.tight_layout()

////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
Italian Trulli
In pattern: SUPERPATTERN

Frequency: 4

Non-data size: 3

Instances


Project Name: biotite-dev/biotite
Commit Name: ac052d8737d28287040445e119b1d8c8d8cd1519
Time: 2018-10-16
Author: patrick.kunzm@gmail.com
File Name: doc/examples/scripts/sequence/lexa_conservation.py
Class Name:
Method Name:


Project Name: elbayadm/attn2d
Commit Name: b65c579bed003ec5111dc31aeaaac3bb36784a5a
Time: 2019-02-22
Author: myleott@fb.com
File Name: tests/test_sequence_generator.py
Class Name: TestDiverseBeamSearch
Method Name: test_diverse_beam_search


Project Name: IBM/adversarial-robustness-toolbox
Commit Name: 64171b3cdf5f0fca6bb11e48831946db63263684
Time: 2020-02-06
Author: killian.levacher@gmail.com
File Name: tests/attacks/evasion/test_fast_gradient.py
Class Name:
Method Name: test_minimal_perturbations_images