a6910af1a33f6457bf42b9e15625ac7cbdcde075,pynets/registration/reg_utils.py,,gen_mask,#Any#Any#Any#,22

Before Change

    else:
        // Check if already skull-stripped. If not, strip it.
        img = nib.load(t1w_head)
        t1w_data = img.get_fdata()
        perc_zero = np.count_nonzero(np.nan_to_num(np.array(
            t1w_data < 10).astype("int"))) / np.count_nonzero(
            np.nan_to_num(t1w_data.astype("bool").astype("int")))
        // TODO: find a better heuristic for determining whether a t1w image has

After Change

    else:
        // Perform skull-stripping if mask not provided.
        img = nib.load(t1w_head, mmap=False)
        t1w_data = img.get_fdata().astype("float32")
        try:
            t1w_brain_mask = deep_skull_strip(t1w_data, t1w_brain_mask, img)
        except RuntimeError:
            print("Deepbrain extraction failed...")

Instances