49b10f8937fc4e8e58270189011a9a0e5927f0e4,skbio/io/fasta.py,,_fasta_to_generator,#Any#Any#,500

Before Change

@register_reader("fasta")
def _fasta_to_generator(fh, constructor=BiologicalSequence):
    line = next(fh)
    if _is_header(line):
        id_, desc = _parse_header(line)
    else:
        raise FASTAFormatError("Found line without a FASTA header:\n%s" % line)

After Change

@register_reader("fasta")
def _fasta_to_generator(fh, constructor=BiologicalSequence):
    for seq, id_, desc in _fasta_or_qual_to_generator(fh, format="fasta"):
        yield constructor(seq, id=id_, description=desc)


@register_reader("fasta", BiologicalSequence)
def _fasta_to_biological_sequence(fh, seq_num=1):
    return _fasta_to_sequence(fh, seq_num, BiologicalSequence)

Instances