77c81599403cd8c69b583ebceba1a2b96c9a3273,pysb/examples/run_earm_1_0.py,,fig_4b,#,66

Before Change

    print("Simulating model for figure 4B...")

    t = linspace(0, 6*3600, 6*60+1)  // 6 hours
    x = odesolve(model, t)

    x_norm = c_[x["Bid_unbound"], x["PARP_unbound"], x["mSmac_unbound"]]
    x_norm = 1 - x_norm / x_norm[0, :]  // gets away without max() since first values are largest

After Change

    print("Simulating model for figure 4B...")

    t = linspace(0, 6*3600, 6*60+1)  // 6 hours
    x = ScipyOdeSimulator(model).run(tspan=t).all

    x_norm = c_[x["Bid_unbound"], x["PARP_unbound"], x["mSmac_unbound"]]
    x_norm = 1 - x_norm / x_norm[0, :]  // gets away without max() since first values are largest

Instances