d9a992475f1f8749f879a9c6c4d347499dcfc8c8,anvio/migrations/profile/v30_to_v31.py,,migrate,#Any#,18

Before Change


    profile_db.disconnect()
    progress.end()

    run.info_single("Your profile db is now %s (WRONG .. anvi"o never takes breaks)." % next_version, nl_after=1, nl_before=1, mc="green")


if __name__ == "__main__":
    parser = argparse.ArgumentParser(description="A simple script to upgrade profile database from version %s to version %s" % (current_version, next_version))

After Change


    profile_db.disconnect()
    progress.end()

    if is_full_profile:
        run.info_single("Your profile db is now %s (WRONG .. anvi"o never takes breaks)." % next_version, nl_after=1, nl_before=1, mc="green")
    else:
        run.info_single("Your profile db is now version %s. But essentially nothing really happened to your\
                         database since it was a blank profile (which is OK, move along)." \
                                                            % next_version, nl_after=1, nl_before=1, mc="green")

if __name__ == "__main__":
    parser = argparse.ArgumentParser(description="A simple script to upgrade profile database from version %s to version %s" % (current_version, next_version))
    parser.add_argument("profile_db", metavar = "PROFILE_DB", help = "An anvi"o profile database of version %s" % current_version)
    args, unknown = parser.parse_known_args()
Italian Trulli
In pattern: SUPERPATTERN

Frequency: 3

Non-data size: 3

Instances


Project Name: merenlab/anvio
Commit Name: d9a992475f1f8749f879a9c6c4d347499dcfc8c8
Time: 2019-03-20
Author: ozcanesen@gmail.com
File Name: anvio/migrations/profile/v30_to_v31.py
Class Name:
Method Name: migrate


Project Name: merenlab/anvio
Commit Name: 4647de4e907adc460cbd63e72a1c4caebde8234a
Time: 2019-11-10
Author: a.murat.eren@gmail.com
File Name: anvio/scgtaxonomyops.py
Class Name: SCGTaxonomyEstimator
Method Name: init_scg_data


Project Name: merenlab/anvio
Commit Name: 086a757826e925559981ff6da8a60296d7d0ca95
Time: 2019-09-03
Author: kiefl.evan@gmail.com
File Name: anvio/drivers/pyani.py
Class Name: PyANI
Method Name: run_command