5744ab03e7230e569811b07378cf0af5fa7ab773,anvio/scgtaxonomyops.py,PopulateContigsDatabaseWithSCGTaxonomy,get_SCG_sequences_dict_from_contigs_db,#PopulateContigsDatabaseWithSCGTaxonomy#,1120

Before Change

        hmm_sequences_dict = utils.get_filtered_dict(hmm_sequences_dict, "gene_name", set(self.default_scgs_for_taxonomy))

        if not len(hmm_sequences_dict):
            raise ConfigError("Your selections returned an empty list of genes to work with :/")

        self.run.info("Num relevant SCGs in contigs db", "%s" % (pp(len(hmm_sequences_dict))))

        scg_sequences_dict = {}

After Change

        hmm_sequences_dict = utils.get_filtered_dict(hmm_sequences_dict, "gene_name", set(self.default_scgs_for_taxonomy))

        if not len(hmm_sequences_dict):
            return None

        self.run.info("Num relevant SCGs in contigs db", "%s" % (pp(len(hmm_sequences_dict))))

        scg_sequences_dict = {}

Instances