e44da6a354fca97f4d5f8a12ae55d9771b22dfd4,cnvlib/importers.py,,unpipe_name,#Any#,79

Before Change

            gene_names.remove("CGH")
        else:
            logging.warn("*WARNING* Ambiguous gene name: %s", name)
    return gene_names.pop()


// __________________________________________________________________________
// import-seg

After Change

    if len(gene_names) == 1:
        return name
    else:
        cleaned_names = gene_names.difference(params.IGNORE_GENE_NAMES)
        if cleaned_names:
            gene_names = cleaned_names
        new_name = sorted(gene_names, key=len, reverse=True)[0]
        if len(gene_names) > 1:
            logging.warn("*WARNING* Ambiguous gene name %r; using %r",
                         name, new_name)
        return new_name

Instances