cad628ca4fc790e4e310a662392aa13beded04f4,hicexplorer/hicPlotMatrix.py,,main,#Any#,395

Before Change

                             "the correct spelling of the chromosome names. \n")
            sys.stderr.write("\n".join(invalid_chromosomes))

    print("list(ma.interval_trees)",list(ma.interval_trees))
    ma.restoreMaskedBins()

    if args.clearMaskedBins:
        ma.maskBins(ma.nan_bins)

After Change

    chrom_cooler = None
    region_start_cooler = None
    region_end_cooler = None
    if args.matrix.endswith("cool"):
        if args.region:
            // pass
            chrom_cooler, region_start_cooler, region_end_cooler = translate_region(args.region)
            
    ma = HiCMatrix.hiCMatrix(args.matrix, pChrName=chrom_cooler, pChrStart=region_start_cooler, pChrEnd=region_end_cooler)
    if args.perChromosome and args.region:
        sys.stderr.write("ERROR, choose from the option "
                         "--perChromosome or --region, the two "

Instances