82c63c208dd9cf501685585949b470891dad9bfb,pynets/utils.py,,reorient_img,#Any#Any#,742

Before Change

        img = "{}/img.nii.gz".format(out_dir)
        shutil.copyfile(img_orig, img)
        cmd = "fslorient -getqform " + img
        qform = os.popen(cmd).read().strip("\n")
        // Posterior-Anterior Reorientation
        if float(qform.split(" ")[:-1][5]) <= 0:
            img_PA = "{}/img_reor_PA.nii.gz".format(out_dir)
            print("Reorienting P-A flip (img)...")

After Change

        print(affine)
    else:
        img = img_orig
        print("Image already in RAS+")

    return img

Instances