38512d92a8682a62e73c5b9e86366888be374532,dragonn/vis/__init__.py,,plot_ism,#Any#Any#Any#Any#Any#Any#,83

Before Change

    ymin=np.amin(ism_mat)
    ymax=np.amax(ism_mat)
    hmap=axes[1].imshow(ism_mat.T,extent=extent,vmin=ymin, vmax=ymax, interpolation="nearest",aspect="auto")
    axes[1].set_yticks(np.arange(50,100*ism_mat.shape[1],100),("A","C","G","T"))
    axes[1].set_xlabel("Sequence base")
    if xlim!=None:
        axes[0].set_xlim(xlim)
        axes[1].set_xlim(xlim) 

After Change

    abs_highest=max([abs(ymin),abs(ymax)])
    hmap=axes[1].imshow(ism_mat.T,extent=extent,vmin=-1*abs_highest, vmax=abs_highest, interpolation="nearest",aspect="auto")
    axes[1].set_yticks(np.array([100,200,300,400]))
    axes[1].set_yticklabels(["T","G","C","A"])
    axes[1].set_xlabel("Sequence base")
    if xlim!=None:
        axes[0].set_xlim(xlim)

Instances