96a51024a383d56a2be823d61b10c09020d2f2cd,src/biotite/sequence/io/fasta/convert.py,,_convert_to_sequence,#Any#,192

Before Change

    except AlphabetError:
        pass
    try:
        return NucleotideSequence(nuc_seq_str, ambiguous=True)
    except AlphabetError:
        raise ValueError("FASTA data cannot be converted either to "
                         ""NucleotideSequence" nor to "ProteinSequence"")

After Change

            seq_str = seq_str.replace("U", "C")
        else:
            warn = False
        prot_seq = ProteinSequence(seq_str)
        // Raise Warning after conversion into "ProteinSequence"
        // to wait for potential "AlphabetError"
        if warn:
            warnings.warn(
                "ProteinSequence objects do not support selenocysteine (U), "
                "occurrences were substituted by cysteine (C)"
            )
        return prot_seq
    except AlphabetError:
        raise ValueError("FASTA data cannot be converted either to "
                         ""NucleotideSequence" nor to "ProteinSequence"")

Instances