96327941cae1c7eca3c44fb532b9eb224259c210,bin/basenji_hdf5_genes.py,,check_wigs,#Any#,356

Before Change

def check_wigs(target_wigs_file):
  for line in open(target_wigs_file):
    a = line.rstrip().split("\t")
    wig_file = a[1]
    if not os.path.isfile(wig_file):
      print("Cannot find %s" % wig_file, file=sys.stderr)
      exit(1)

After Change

////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
def check_wigs(target_wigs_file):
  target_wigs_df = pd.read_table(target_wigs_file)
  for wig_file in target_wigs_df.file:
    if not os.path.isfile(wig_file):
      print("Cannot find %s" % wig_file, file=sys.stderr)
      exit(1)

Instances