a6ce1e2cf0bc83cc464d18537aa77794dd72d5a8,scanpy/tools/diffmap.py,,diffmap,#Any#Any#Any#Any#Any#Any#Any#Any#Any#,6

Before Change

    adata.uns["data_graph_distance_local"] = dmap.Dsq
    adata.uns["data_graph_norm_weights"] = dmap.Ktilde
    adata.obsm["X_diffmap"] = dmap.rbasis[:, 1:]
    adata.obs["X_diffmap0"] = dmap.rbasis[:, 0]
    adata.uns["diffmap_evals"] = dmap.evals[1:]
    logg.info("    finished", time=True, end=" " if settings.verbosity > 2 else "\n")
    logg.hint("added\n"

After Change

                         "Mind that the 0th component of diffusion maps "
                         "is not used for visualization.")
    adata = adata.copy() if copy else adata
    dmap = dpt.DPT(adata, n_jobs=n_jobs)
    // check whether we need to recompute
    if dmap.evals is None or n_dcs is None or dmap.evals.size < n_dcs:
        dmap.compute_eigen(n_comps=n_comps)
    adata.obsm["X_diffmap"] = dmap.rbasis
    adata.uns["diffmap_evals"] = dmap.evals

Instances