ffb068553a2044f33ad9395d6e45f2f2a7375587,scanpy/tests/test_score_genes.py,,test_add_score,#,5

Before Change

def test_add_score():
    // TODO: write a test that costs less resources and is more meaningful
    adata = AnnData(np.random.randint(0, 1000, 100000).reshape((100, 1000)))
    gene_names = np.array(["".join([chr(x) for x in np.random.randint(65, 90, 6)]) for n in range(2000)])
    adata.var_names = gene_names[:1000]
    sc.pp.normalize_per_cell(adata, counts_per_cell_after=1e4)
    sc.pp.log1p(adata)

After Change

    adata.var_names = gene_names[:1000]
    sc.pp.normalize_per_cell(adata, counts_per_cell_after=1e4)
    sc.pp.log1p(adata)
    some_genes = np.r_[
        np.unique(gene_names[np.random.randint(0, 1000, 10)]),
        np.unique(gene_names[np.random.randint(1000, 2000, 3)]),
    ]

Instances