96a51024a383d56a2be823d61b10c09020d2f2cd,src/biotite/sequence/io/fasta/convert.py,,_convert_to_sequence,#Any#,192

Before Change

    except AlphabetError:
        pass
    try:
        return NucleotideSequence(nuc_seq_str, ambiguous=True)
    except AlphabetError:
        raise ValueError("FASTA data cannot be converted either to "
                         ""NucleotideSequence" nor to "ProteinSequence"")

After Change

    try:
        // For nucleotides uracil is represented by thymine and
        // there is is only one letter for completely unknown nucleotides
        return NucleotideSequence(seq_str.replace("U","T").replace("X","N"))
    except AlphabetError:
        pass
    try:
        if "U" in seq_str:

Instances