d603299e387628f3878ff0b783698494f87c602c,scanpy/datasets/_expression_atlas.py,,expression_atlas,#Any#,117

Before Change

    .. _EBI Single Cell Expression Atlas: https://www.ebi.ac.uk/gxa/sc/experiments
    
    if not settings.dataset_dir.is_dir():
        // Log here
        settings.dataset_dir.mkdir()
    experiment_dir = settings.dataset_dir / accession
    if (experiment_dir / f"{accession}.h5ad").is_file():
        adata = anndata.read(experiment_dir / f"{accession}.h5ad")
    else:

After Change

    
    download_experiment(accession)

    print("Downloaded {} to {}".format(accession, experiment_dir.absolute()))

    with ZipFile(experiment_dir / "expression_archive.zip", "r") as f:
        adata = read_expression_from_archive(f)
    obs = pd.read_csv(

Instances