4a1b03b285c50a56c606a92b47b311f17157f55e,atlas/report/qc_report.py,,get_stats_from_zips,#Any#,20

Before Change

    for zfile in zips:
        zf = zipfile.ZipFile(zfile)
        // local testing files
        sample = os.path.basename(zfile).partition("_")[0]
        // relative path from snakemake
        // sample = zfile.partition(os.path.sep)[0]
        if "se/boxplot_quality.txt" in zf.namelist():

After Change

    for zfile in zips:
        zf = zipfile.ZipFile(zfile)
        // local testing files
        sample = zfile.split("/")[0]  // HACK: sample name is first name of path
        // relative path from snakemake
        // sample = zfile.partition(os.path.sep)[0]
        if "se/boxplot_quality.txt" in zf.namelist():

Instances