c89d274b734d5a3be34607ccc8e4f54507121a09,pynets/workflows.py,,wb_functional_connectometry,#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#,9
Before Change
res = wb_functional_connectometry_wf.run(plugin="MultiProc")
//res = wb_functional_connectometry_wf.run()
try:
thr=list(res.nodes())[-1].result.outputs.thr
est_path=list(res.nodes())[-1].result.outputs.est_path
except AttributeError:
try:
thr=list(res.nodes())[-2].result.outputs.thr
est_path=list(res.nodes())[-2].result.outputs.est_path
except AttributeError:
thr=list(res.nodes())[-3].result.outputs.thr
est_path=list(res.nodes())[-3].result.outputs.est_path
return(est_path, thr)
def rsn_functional_connectometry(func_file, ID, atlas_select, network, node_size, mask, thr, parlistfile, multi_nets, conn_model, dens_thresh, conf, adapt_thresh, plot_switch, parc, ref_txt, procmem, dir_path, multi_thr, multi_atlas, max_thr, min_thr, step_thr, k, clust_mask, k_min, k_max, k_step, k_clustering, user_atlas_list, clust_mask_list, node_size_list):
from nipype.pipeline import engine as pe
After Change
wb_functional_connectometry_wf.config["execution"]["plugin"]="MultiProc"
res = wb_functional_connectometry_wf.run(plugin="MultiProc")
out_node = [x for x in list(res.nodes()) if str(x) == [x for x in [str(i) for i in list(res.nodes())] if "outputnode" in x][-1]][0]
try:
thr=out_node.result.outputs.thr
est_path=out_node.result.outputs.est_path
except AttributeError:
print("Workflow failed!")
return(est_path, thr)
def rsn_functional_connectometry(func_file, ID, atlas_select, network, node_size, mask, thr, parlistfile, multi_nets, conn_model, dens_thresh, conf, adapt_thresh, plot_switch, parc, ref_txt, procmem, dir_path, multi_thr, multi_atlas, max_thr, min_thr, step_thr, k, clust_mask, k_min, k_max, k_step, k_clustering, user_atlas_list, clust_mask_list, node_size_list):
from nipype.pipeline import engine as pe
In pattern: SUPERPATTERN
Frequency: 4
Non-data size: 43
Instances
Project Name: dPys/PyNets
Commit Name: c89d274b734d5a3be34607ccc8e4f54507121a09
Time: 2018-01-19
Author: dpisner@utexas.edu
File Name: pynets/workflows.py
Class Name:
Method Name: wb_functional_connectometry
Project Name: dPys/PyNets
Commit Name: c89d274b734d5a3be34607ccc8e4f54507121a09
Time: 2018-01-19
Author: dpisner@utexas.edu
File Name: pynets/workflows.py
Class Name:
Method Name: rsn_functional_connectometry
Project Name: dPys/PyNets
Commit Name: c89d274b734d5a3be34607ccc8e4f54507121a09
Time: 2018-01-19
Author: dpisner@utexas.edu
File Name: pynets/workflows.py
Class Name:
Method Name: wb_structural_connectometry
Project Name: dPys/PyNets
Commit Name: c89d274b734d5a3be34607ccc8e4f54507121a09
Time: 2018-01-19
Author: dpisner@utexas.edu
File Name: pynets/workflows.py
Class Name:
Method Name: wb_functional_connectometry
Project Name: dPys/PyNets
Commit Name: c89d274b734d5a3be34607ccc8e4f54507121a09
Time: 2018-01-19
Author: dpisner@utexas.edu
File Name: pynets/workflows.py
Class Name:
Method Name: rsn_structural_connectometry