bbe6005e22de97a26946e61dafa36b83a0f7f2d2,lib/prody/tests/test_sequence/test_analysis.py,TestCalcSCA,testMATLAB,#TestCalcSCA#,574

Before Change

    def testMATLAB(self):

        mat = scipy.io.loadmat(pathDatafile("sca.mat"))
        expect = mat["sca"]
        result = buildSCAMatrix(FASTA, turbo=True)
        assert_array_almost_equal(expect, result, err_msg="turbo failed")
        result = buildSCAMatrix(FASTA, turbo=False)
        assert_array_almost_equal(expect, result, err_msg="w/out turbo failed")

After Change

    def testMATLAB(self):

        sca = fromfile(pathDatafile("msa_Cys_knot_sca.dat"))
        expect = sca.reshape((10, 10))
        fasta = FASTA[:,:10]
        result = buildSCAMatrix(fasta, turbo=True)
        assert_array_almost_equal(expect, result, err_msg="turbo failed")
        result = buildSCAMatrix(fasta, turbo=False)

Instances