a003496dba3190c2e874dc0f574025c1aab46828,prody/database/dali.py,,searchDali,#Any#Any#Any#Any#,23

Before Change

            pdb_chain = pdbId + chain
            dali_title = "Title_"+pdb_chain
        else:
            raise ValueError("invalid input: " + pdb)
    parameters = { "cd1" : pdb_chain, "method": "search", "title": dali_title, "address": "" }
    // enc_params = urllib.urlencode(parameters).encode("utf-8")
    // request = urllib2.Request(daliURL, enc_params)
    request = requests.post(daliURL, parameters, files=files)

After Change

            raise ValueError("input structure (%s) does not have chain %s"%(atoms.getTitle(), chain))
        
        if len(chain_set) > 1:
            if not chain:
                raise TypeError("the structure (%s) contains more than one chain, therefore a chain identifier "
                                "needs to be specified"%pdb.getTitle())
            atoms = atoms.select("chain "+chain)
        else:
            chain = chain_set.pop()
            

Instances