1101d1c040850b51c9864da8b105450606591d9a,skbio/core/alignment/tests/test_pairwise.py,PairwiseAlignmentTests,test_traceback,#PairwiseAlignmentTests#,397

Before Change

                   [2, 2, 2, 2]]
        tback_m = np.array(tback_m)
        // start at bottom-right
        expected = ("ACG-", "ACGT", 1, 0, 0)
        actual = _traceback(tback_m, score_m, Alignment([DNA("ACG")]),
            Alignment([DNA("ACGT")]), 4, 3)
        self.assertEqual(actual, expected)

After Change

                   [2, 2, 2, 2]]
        tback_m = np.array(tback_m)
        expected = ("G", "G", 6, 2, 2)
        expected = (Alignment([BiologicalSequence("G")]),
                    Alignment([BiologicalSequence("G")]), 6, 2, 2)
        actual = _traceback(tback_m, score_m, Alignment([DNA("ACG")]),
            Alignment([DNA("ACGT")]), 3, 3)
        self.assertEqual(actual, expected)

Instances