25f293aaf43c420572ca1cec94ac0ea6a16f70e7,anvio/taxoestimation.py,SCGsTaxomy,make_list_taxonomy,#SCGsTaxomy#Any#Any#Any#Any#,955

Before Change

            print(best)
            for name ,some in best:
                print(name, some)
            bestident = matrix[individue].max()
            bestSCG=matrix_pident[individue].sum(axis=1)
            print(best)
            print(summist)

After Change

    def make_list_taxonomy(self, matrix_pident, matrix, list_position_entry,list_position_ribosomal):
        taxonomy = []
        individue = matrix_pident.rank(method="min", ascending=False).sum(axis=1).idxmin()
        bestSCG = pd.to_numeric(matrix_pident.loc[individue,:]).idxmax()
        bestident = matrix_pident.loc[individue, bestSCG]

        taxonomy.append({"bestSCG" : bestSCG,"bestident" : bestident,"taxo" : OrderedDict(self.taxonomy_dict[individue])})
        return(taxonomy)

Instances