8cb7809825da7a527eb81c87d3c79a99e3398f57,doc/examples/scripts/sequence/luxa_comparison.py,,,#,26
Before Change
query = entrez.SimpleQuery("luxA", "Gene Name") \
& entrez.SimpleQuery("srcdb_swiss-prot", "Properties")
uids = entrez.search(query, db_name="protein")
file_name = entrez.fetch_single_file(
uids, biotite.temp_file("fasta"), db_name="protein", ret_type="fasta"
)
fasta_file = fasta.FastaFile.read(file_name)
ids = []
sequences = []
After Change
query = entrez.SimpleQuery("luxA", "Gene Name") \
& entrez.SimpleQuery("srcdb_swiss-prot", "Properties")
uids = entrez.search(query, db_name="protein")
fasta_file = fasta.FastaFile.read(entrez.fetch_single_file(
uids, None, db_name="protein", ret_type="fasta"
))
ids = []
sequences = []
In pattern: SUPERPATTERN
Frequency: 5
Non-data size: 4
Instances
Project Name: biotite-dev/biotite
Commit Name: 8cb7809825da7a527eb81c87d3c79a99e3398f57
Time: 2020-04-23
Author: patrick.kunzm@gmail.com
File Name: doc/examples/scripts/sequence/luxa_comparison.py
Class Name:
Method Name:
Project Name: biotite-dev/biotite
Commit Name: 8cb7809825da7a527eb81c87d3c79a99e3398f57
Time: 2020-04-23
Author: patrick.kunzm@gmail.com
File Name: doc/examples/scripts/sequence/hcn_hydropathy.py
Class Name:
Method Name:
Project Name: biotite-dev/biotite
Commit Name: 8cb7809825da7a527eb81c87d3c79a99e3398f57
Time: 2020-04-23
Author: patrick.kunzm@gmail.com
File Name: doc/examples/scripts/sequence/pi3k_alignment.py
Class Name:
Method Name:
Project Name: biotite-dev/biotite
Commit Name: 8cb7809825da7a527eb81c87d3c79a99e3398f57
Time: 2020-04-23
Author: patrick.kunzm@gmail.com
File Name: doc/examples/scripts/sequence/avidin_alignment.py
Class Name:
Method Name:
Project Name: biotite-dev/biotite
Commit Name: 8cb7809825da7a527eb81c87d3c79a99e3398f57
Time: 2020-04-23
Author: patrick.kunzm@gmail.com
File Name: doc/examples/scripts/sequence/color_schemes_protein.py
Class Name:
Method Name: