749855e9d1b5bd1aa7b46db144503922fbc0a336,doc/examples/brain_extraction_dwi.py,,,#,8

Before Change

    print(f)
    img = nib.load(f)
    data = img.get_data()
    fname = os.path.splitext(os.path.splitext(f)[0])[0]

    b0_mask, mask = medotsu(data, 4, 4, autocrop=False)
    mask_img = nib.Nifti1Image(mask.astype(np.float32), img.get_affine())
    b0_img = nib.Nifti1Image(b0_mask.astype(np.float32), img.get_affine())

After Change

plt.subplot(1,2,1)
plt.imshow(data[:,:,slice])
plt.subplot(1,2,2)
plt.imshow(b0_mask[:,:,slice])
plt.show()

Instances