b492aac4d2805b65f66e789cb3d388ab5f0119c8,workers/data_refinery_workers/processors/test_salmon.py,SalmonToolsTestCase,test_double_reads,#SalmonToolsTestCase#,296

Before Change

            "input_file_path_2": self.test_dir + "double_input/reads_2.fastq",
            "output_directory": self.test_dir + "double_output/"
        }
        job_context["job"] = ProcessorJob()

        homo_sapiens = Organism.get_object_for_name("HOMO_SAPIENS")
        sample = Sample()
        sample.organism = homo_sapiens

After Change

        job_context = {
            "job_id": 123,
            "job": ProcessorJob(),
            "pipeline": Pipeline(name="Salmon"),
            "input_file_path": self.test_dir + "double_input/reads_1.fastq",
            "input_file_path_2": self.test_dir + "double_input/reads_2.fastq",
            "output_directory": self.test_dir + "double_output/"

Instances