7fe6e64b7ff3ef7c0a060ccd3c702005e9458bbc,deepchem/datasets/pdbbind_datasets.py,,load_core_pdbbind_grid,#Any#Any#Any#,78

Before Change


    computed_feature = compute_pdbbind_grid_feature(
        compound_featurizers, complex_featurizers, pdb_subdir, pdb_code)
    if len(computed_feature) == 0:
      computed_feature = np.zeros(1024)
    features.append(computed_feature)
  X = np.vstack(features)
  w = np.ones_like(y)
   

After Change


        compound_featurizers, complex_featurizers, pdb_subdir, pdb_code)
    if feature_len is None:
      feature_len = len(computed_feature)
    if len(computed_feature) != feature_len:
      print("Featurization failed for %s!" % pdb_code)
      continue
    y_inds.append(ind)
    features.append(computed_feature)
  ////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// DEBUG
  print("[feature.shape for feature in features]")
Italian Trulli
In pattern: SUPERPATTERN

Frequency: 3

Non-data size: 4

Instances


Project Name: deepchem/deepchem
Commit Name: 7fe6e64b7ff3ef7c0a060ccd3c702005e9458bbc
Time: 2016-09-13
Author: bharath.ramsundar@gmail.com
File Name: deepchem/datasets/pdbbind_datasets.py
Class Name:
Method Name: load_core_pdbbind_grid


Project Name: biotite-dev/biotite
Commit Name: 7667b2408f7f109e7ca179593c5998c132651fed
Time: 2018-09-25
Author: patrick.kunzm@gmail.com
File Name: doc/examples/scripts/sequence/lexa_conservation.py
Class Name:
Method Name:


Project Name: facebookresearch/deepcluster
Commit Name: 483391c3cbaf1b484cccdb30433de32ce052dc77
Time: 2019-09-05
Author: mathilde@fb.com
File Name: util.py
Class Name: UnifLabelSampler
Method Name: generate_indexes_epoch