488648668508037f84a6ac91017ba2daca223d54,src/biotite/structure/transform.py,,rotate,#Any#Any#,43

Before Change


    transformed.coord = np.dot(transformed.coord, rot_y)
    transformed.coord = np.dot(transformed.coord, rot_z)
    if transformed.box is not None:
        transformed.box = np.dot(transformed.box, rot_x)
        transformed.box = np.dot(transformed.box, rot_y)
        transformed.box = np.dot(transformed.box, rot_z)
    return transformed


def rotate_centered(atoms, angles):
    

After Change


    //    positions.box = np.dot(positions.box, rot_y)
    //    positions.box = np.dot(positions.box, rot_z)
    
    return _put_back(atoms, positions)


def rotate_centered(atoms, angles):
    
Italian Trulli
In pattern: SUPERPATTERN

Frequency: 4

Non-data size: 5

Instances


Project Name: biotite-dev/biotite
Commit Name: 488648668508037f84a6ac91017ba2daca223d54
Time: 2019-11-26
Author: patrick.kunzm@gmail.com
File Name: src/biotite/structure/transform.py
Class Name:
Method Name: rotate


Project Name: biotite-dev/biotite
Commit Name: 488648668508037f84a6ac91017ba2daca223d54
Time: 2019-11-26
Author: patrick.kunzm@gmail.com
File Name: src/biotite/structure/transform.py
Class Name:
Method Name: align_vectors


Project Name: biotite-dev/biotite
Commit Name: 488648668508037f84a6ac91017ba2daca223d54
Time: 2019-11-26
Author: patrick.kunzm@gmail.com
File Name: src/biotite/structure/transform.py
Class Name:
Method Name: translate


Project Name: biotite-dev/biotite
Commit Name: 488648668508037f84a6ac91017ba2daca223d54
Time: 2019-11-26
Author: patrick.kunzm@gmail.com
File Name: src/biotite/structure/transform.py
Class Name:
Method Name: rotate_about_axis