86fa89f0f50e153d625108d93f1f9eb8ee59719e,workers/data_refinery_workers/processors/create_compendia.py,,_create_result_objects,#Any#,364

Before Change

    // Save the related metadata file
    organism = job_context["samples"][organism_key][0].organism

    try:
        last_compendia = ComputedFile.objects.filter(
                                    is_compendia=True,
                                    compendia_organism=organism).order_by("-compendia_version")[-1]
        compendia_version = last_compendia.compendia_version + 1
    except Exception as e:
        // This is the first compendia for this Organism
        compendia_version = 1

    archive_computed_file = ComputedFile()
    archive_computed_file.absolute_file_path = archive_path
    archive_computed_file.filename = archive_path.split("/")[-1]
    archive_computed_file.calculate_sha1()

After Change

    // Compendia Result Helpers
    primary_organism = job_context["samples"][organism_key][0].organism
    organisms = [primary_organism]
    compendia_version = CompendiaResult.objects.annotate(
                                                   organism_count=Count("organisms")
                                               ).filter(
                                                   primary_organism=primary_organism,
                                                   organisms__in=organisms,
                                                   organism_count=len(organisms)
                                               ).count() + 1
    // Save Compendia Results
    compendia_result = CompendiaResult()
    compendia_result.primary_organism = primary_organism
    compendia_result.organisms.set(organisms)

Instances