e0c9d018aca7bf05486c385484d5ed1c37bac423,pynets/diffconnectometry.py,,coreg_WM_mask_to_diff,#Any#Any#,151

Before Change

    maths = fsl.ImageMaths(in_file=out_file, op_string=args, out_file=out_file)
    print("\nBinarizing WM mask...")
    os.system(maths.cmdline)
    return out_file


def coreg_mask_to_diff(dwi_dir, mask):
    import nipype.interfaces.fsl as fsl

After Change

        os.system(maths.cmdline)
        return out_file

    bin_wm = pe.Node(niu.Function(input_names=["out_file"], output_names=["out_file"],
                                  function=bin_wm), name="bin_wm_node")

    wm_transforms_wf.connect([(inputnode, flirt, [("dwi_infile", "reference"), ("wm_mask_loc", "in_file"),
                                                  ("out_file", "out_file"), ("mat_file", "in_matrix_file")]),
                              (flirt, bin_wm, [("out_file", "out_file")])

Instances