a9224bd99e92d5fbddb9b720e6073cf0ff259f03,anvio/structureops.py,PDBDatabase,get_structure,#PDBDatabase#Any#Any#,1401

Before Change

            if path:
                with open(path, "rb") as f:
                    output_queue.put((pdb_id, f.read()))
            else:
                // The structure could not be downloaded. Interesting :\
                self.run.warning("%s, chain %s was not downloaded :\\" % (pdb_id[:4], pdb_id[-1]))

After Change

        while True:
            pdb_id = available_index_queue.get(True)

            structure = {}
            structure["id"] = pdb_id
            structure["pdb_content"] = self.download_and_return_pdb_content(pdb_id)
            structure["failed"] = False if structure["pdb_content"] else True
            structure["cluster_info"] = self.get_cluster_info(pdb_id)

            output_queue.put(structure)

        // Never reaches here because process is killed by main thread
        return

Instances