35d7c539c93bd0bff7788fad93ce08686e0cc760,mne/source_space.py,,add_source_space_distances,#Any#Any#Any#Any#,2334

Before Change

        // can"t do introspection on dijkstra function because it"s Cython,
        // so we"ll just try quickly here
        try:
            dijkstra(sparse.csr_matrix(np.zeros((2, 2))), limit=1.0)
        except TypeError:
            raise RuntimeError("Cannot use "limit < np.inf" unless scipy "
                               "> 0.13 is installed")

After Change

        raise RuntimeError("scipy >= 0.11 must be installed (or > 0.13 "
                           "if dist_limit < np.inf")

    if src.kind != "surface":
        raise RuntimeError("Currently all source spaces must be of surface "
                           "type")

    parallel, p_fun, _ = parallel_func(_do_src_distances, n_jobs)
    min_dists = list()
    min_idxs = list()
    logger.info("Calculating source space distances (limit=%s mm)..."
                % (1000 * dist_limit))
    max_n = max(s["nuse"] for s in src)
    if max_n > _DIST_WARN_LIMIT:
        warn("Computing distances for %d source space points (in one "
             "hemisphere) will be very slow, consider using add_dist=False"
             % (max_n,))
    for s in src:
        connectivity = mesh_dist(s["tris"], s["rr"])
        d = parallel(p_fun(connectivity, s["vertno"], r, dist_limit)

Instances