bafaa5003229ac5232cc9a19da05ddb16c18d374,scanpy/tests/test_score_genes.py,,test_add_score,#,6

Before Change

    // TODO: write a test that costs less resources and is more meaningful
    adata = AnnData(np.random.randint(0, 1000, 100000).reshape((100, 1000)))
    gene_names = np.array(
        ["".join(map(chr, np.random.randint(65, 90, 6))) for _ in range(2000)]
    )
    adata.var_names = gene_names[:1000]
    sc.pp.normalize_per_cell(adata, counts_per_cell_after=1e4)

After Change

    // create some non-estinsting names with 7 letters:
    non_existing_genes = _create_random_gene_names(n_genes=3, name_length=7)
    some_genes = np.r_[
        np.unique(np.random.choice(adata.var_names, 10)), np.unique(non_existing_genes)
    ]
    sc.tl.score_genes(adata, some_genes, score_name="Test")
    assert adata.obs["Test"].dtype == "float32"

Instances