e73882f59bad1bb73a1cd7070f01e147f69c5bf4,lib/prody/proteins/blastpdb.py,,blastPDB,#Any#Any#,32

Before Change

        LOGGER.sleep(int(sleep), "to reconnect NCBI for search results.")
        LOGGER.write("Connecting NCBI for search results...")
        request = urllib2.Request(url, data, {"User-agent": "ProDy"})
        handle = urllib2.urlopen(request)
        results = handle.read()
        index = results.find("Status=")
        LOGGER.clear()
        if index < 0:

After Change

        LOGGER.warn("Keyword argument(s) {0} are not used."
                    .format(", ".join([repr(key) for key in kwargs])))

    try:
        import urllib.parse 
        urlencode = lambda data: bytes(urllib.parse.urlencode(data), "utf-8")
    except ImportError:
        from urllib import urlencode

    url = "http://blast.ncbi.nlm.nih.gov/Blast.cgi"
    
    data = urlencode(query)
    LOGGER.timeit("_prody_blast")

Instances