2c339f08da80a6a6d52df37b64fe148155a13e86,cellprofiler/modules/align.py,Align,apply_alignment,#Align#Any#Any#Any#Any#Any#Any#,426

Before Change

                        off_x, off_y, most_cropped_image_name):
        image = workspace.image_set.get_image(input_image_name,
                                              must_be_grayscale = True)
        most_cropped_image = workspace.image_set.get_image(most_cropped_image_name)
        
        """Create an output image that"s offset by the given // of pixels"""
        pixels = most_cropped_image.crop_image_similarly(image.pixel_data)
        output_pixels = np.zeros(pixels.shape)

After Change

        p2[:,:] = p1[:,:]
        output_mask = np.zeros(shape, bool)
        p1, p2 = offset_slice(image.mask, output_mask, off_y, off_x)
        p2[:,:] = p1[:,:]
        if np.all(output_mask):
            output_mask = None
        crop_mask = np.zeros(image.pixel_data.shape, bool)
        p1, p2 = offset_slice(crop_mask, output_pixels, off_y, off_x)

Instances