a48261482ed4fa257219095120ab90012da615bb,pynets/registration/reg_utils.py,,match_target_vox_res,#Any#Any#Any#Any#,550

Before Change

        img_file_res = "%s%s%s%s" % (out_dir, "/", os.path.basename(img_file).split(".nii.gz")[0],
                                     "_res.nii.gz")
        data2, affine2 = reslice(data, affine, zooms, new_zooms)
        if abs(np.round(zooms[0],1)) != abs(np.round(zooms[1],1)) != abs(np.round(zooms[2],1)):
            raise ValueError("ERROR: isotropic voxel resolutions not supported.")
        img2 = nib.Nifti1Image(data2, affine=affine2, header=hdr)
        img2 = normalize_xform(img2)
        nib.save(img2, img_file_res)
        print("Resliced affine: ")

After Change

        data2, affine2 = reslice(data, affine, zooms, new_zooms)

        // Resize FOV if voxels were non-isotropic
        scale_factor = np.array(zooms) / np.array(new_zooms)
        affine2[:3, 3] = affine2[:3, 3].dot(np.diag(scale_factor/stats.mode(scale_factor)[0][0]))
        img2 = nib.Nifti1Image(data2, affine=affine2)
        img2 = normalize_xform(img2)
        nib.save(img2, img_file_res)

Instances