4d934160aa7f4f9f1d5cdea7cd0e66cfc3d43d05,third_party/nucleus/io/fasta.py,InMemoryRefReader,__str__,#InMemoryRefReader#,198

Before Change

    raise ValueError("Unknown contig", contig_name)

  def __str__(self):
    contigs_strs = [
        "Contig(chrom={} start={}, end={}, bases={})".format(
            chrom, start, end, bases
            if len(bases) < 50 else bases[0:50] + "...")
        for chrom, (start, end, bases) in self._chroms.iteritems()
    ]
    return "InMemoryRefReader(contigs={})".format("".join(contigs_strs))

  __repr__ = __str__

After Change

    contigs_strs = [
        _format_refseq(refseq)
        for refseq in self._reader.reference_sequences.itervalues()
    ]
    return "InMemoryRefReader(contigs={})".format("".join(contigs_strs))

  __repr__ = __str__

Instances