52bdab14484a69594976e84afc70a0790f679588,pynets/registration/register.py,FmriReg,atlas2t1wmni_align,#FmriReg#Any#Any#Any#,766

Before Change

        // Set intensities to int
        atlas_img = nib.load(aligned_atlas_t1mni)
        atlas_data = np.around(np.asarray(atlas_img.dataobj)).astype("int16")
        nib.save(nib.Nifti1Image(atlas_data.astype("int16"), affine=atlas_img.affine,
                                 header=atlas_img.header), aligned_atlas_t1mni)
        os.system("fslmaths {} -mas {} {}".format(aligned_atlas_t1mni, gm_mask_mni, aligned_atlas_t1mni_gm))
        atlas_img.uncache()

        return aligned_atlas_t1mni_gm

After Change

            img.header.extensions.clear()
        nib.save(img, aligned_atlas_t1mni)

        gm_mask_mni_img = nib.load(gm_mask_mni)
        if len(gm_mask_mni_img.header.extensions) != 0:
            gm_mask_mni_img.header.extensions.clear()
        nib.save(gm_mask_mni_img, gm_mask_mni)
        os.system("fslmaths {} -mas {} {}".format(aligned_atlas_t1mni, gm_mask_mni, aligned_atlas_t1mni_gm))

        atlas_img.uncache()

Instances