cf7d0bdc4133ea3248e054fa93aa2b5a6f8f2fca,doc/examples/compute_SNR_in_corpus_callosum.py,,,#,25

Before Change

//tensor_odfs = tenmodel.fit(data_small[roi]).odf(sphere)

fvtk.add(ren, cfa_crop)
fvtk.add(ren, mask_corpus_callosum)
fvtk.show(r)


The mask is not very good, so let"s change the threshold and restart segmenting

After Change

plt.figure("Corpus callosum segmentation")
plt.subplot(1, 2, 1)
plt.title("Corpus callosum")
plt.imshow((cfa[..., 0])[40, ...])

plt.subplot(1, 2, 2)
plt.title("Corpus callosum mask with a threshold of (%.1f, %.1f, %.1f, %.1f, %.1f, %.1f)" % threshold2)

Instances