5738bea7b551b2a9051205ac2a28656d99c32805,hicexplorer/hicAggregateContacts.py,,main,#Any#,702

Before Change

        // make a "fake" clustering to generalize the plotting of the submatrices
        cluster_ids = {}
        num_clusters = 1
        for chrom in chrom_list:
            if chrom not in bed_intervals or chrom not in bed_intervals2:
                continue
            cluster_ids[chrom] = [range(len(chrom_matrix[chrom]))]

    plot_aggregated_contacts(chrom_matrix, chrom_contact_position, cluster_ids, num_clusters, M_half, args)

    if args.outFileContactPairs:
        for idx, chrom in enumerate(chrom_matrix):

After Change

        // make a "fake" clustering to generalize the plotting of the submatrices
        cluster_ids = {}
        num_clusters = 1
        for k in agg_info["agg_matrix"].keys():
            print(k)
            print(agg_info["agg_matrix"][k])
            cluster_ids[k] = [range(len(agg_info["agg_matrix"][k]))]

    plot_aggregated_contacts(agg_info["agg_matrix"], agg_info["agg_contact_position"], cluster_ids, num_clusters, M_half, args)

    if args.outFileContactPairs: // TODO
        for idx, chrom in enumerate(chrom_matrix):

Instances