cd1e79131c5d7c774b27ab9a78d24c8145bc42be,cnvlib/commands.py,,do_heatmap,#Any#Any#Any#,1141

Before Change

    for row in sample_data:
        for chrom, data in iteritems(row):
            if data:
                max_posn = max(coord[1] for coord in data)
                chrom_sizes[chrom] = max(max_posn, chrom_sizes.get(chrom, 0))
            else:
                chrom_sizes[chrom] = chrom_sizes.get(chrom, 0)
    chrom_sizes = collections.OrderedDict(sorted(iteritems(chrom_sizes),

After Change

    for row in sample_data:
        for chrom, data in iteritems(row):
            if len(data):
                max_posn = data.end.max() // max(coord[1] for coord in data)
                chrom_sizes[chrom] = max(max_posn, chrom_sizes.get(chrom, 0))
            else:
                chrom_sizes[chrom] = chrom_sizes.get(chrom, 0)

Instances