9b606c3049d0f6e20f0bb7091ffcf78df3671c54,hicexplorer/test/general/test_hicmatrix.py,,test_save_load,#,25

Before Change


    hic.matrix = csr_matrix(matrix)
    // make matrix symmetric
    hic.setMatrix(hic.matrix, cut_intervals)
    hic.matrix = hm.hiCMatrix.fillLowerTriangle(hic.matrix)
    hic.correction_factors = np.array([0.5, 1, 2, 3, 4])
    hic.nan_bins = np.array([4])

    hic.save(outfile)

After Change


    hic.matrix = csr_matrix(matrix)
    // make matrix symmetric
    hic.setMatrix(hic.matrix, cut_intervals)
    hic.fillLowerTriangle()
    hic.correction_factors = np.array([0.5, 1, 2, 3, 4])
    hic.nan_bins = np.array([4])

    hic.save(outfile)
Italian Trulli
In pattern: SUPERPATTERN

Frequency: 3

Non-data size: 6

Instances


Project Name: deeptools/HiCExplorer
Commit Name: 9b606c3049d0f6e20f0bb7091ffcf78df3671c54
Time: 2018-07-01
Author: wolffj@informatik.uni-freiburg.de
File Name: hicexplorer/test/general/test_hicmatrix.py
Class Name:
Method Name: test_save_load


Project Name: deeptools/HiCExplorer
Commit Name: 9b606c3049d0f6e20f0bb7091ffcf78df3671c54
Time: 2018-07-01
Author: wolffj@informatik.uni-freiburg.de
File Name: hicexplorer/test/general/test_hicmatrix.py
Class Name:
Method Name: test_filterOutInterChrCounts


Project Name: deeptools/HiCExplorer
Commit Name: 9b606c3049d0f6e20f0bb7091ffcf78df3671c54
Time: 2018-07-01
Author: wolffj@informatik.uni-freiburg.de
File Name: hicexplorer/test/general/test_hicmatrix.py
Class Name:
Method Name: test_diagflat