38512d92a8682a62e73c5b9e86366888be374532,dragonn/vis/__init__.py,,plot_motif_scores,#Any#Any#Any#Any#Any#Any#,48

Before Change

    return f,f.get_axes()

def plot_motif_scores(motif_scores,title="",figsize=(20,3),ylim=(0,20),xlim=None,show=True):
    if show==False:
        plt.ioff()
    else:
        plt.ion() 
    //remove any redundant axes
    motif_scores=motif_scores.squeeze()
    f=plt.figure(figsize=figsize)
    plt.plot(motif_scores, "-o")
    plt.xlabel("Sequence base")

After Change

def plot_motif_scores(motif_scores,title="",figsize=(20,3),ylim=(0,20),xlim=None,axes=None):
    //remove any redundant axes
    motif_scores=motif_scores.squeeze()
    if axes is None:
        f,axes=plt.subplots(1,dpi=80,figsize=figsize)
        show=True
    else:
        show=False
    axes.plot(motif_scores, "-o")
    axes.set_xlabel("Sequence base")
    //threshold motif scores at 0; any negative scores are noise that we do not need to visualize
    if ylim!=None:

Instances