3d8431cf7da580c5884c537cf68abe9bedcdf4b5,anvio/taxoestimation.py,SCGsTaxonomy,estimate_taxonomy_for_metagenome,#SCGsTaxonomy#,763

Before Change

        output=[]
        num_metagenome=1
        for estimate_taxonomy_presence in estimate_taxonomy_presences:
            self.run.info("Possible presence ",
                          "/".join(list(estimate_taxonomy_presence.values())))
            if num_metagenome > 1:
                output+=[[self.db_path.replace(".db","")+"_metagenome_"+str(num_metagenome)]+list(estimate_taxonomy_presence.values())]
            else:
                output+=[[self.db_path.replace(".db","")]+list(estimate_taxonomy_presence.values())]

After Change

        

        outpu_appear=[["taxon","number of scg"]]
        for level, appear in dictonnary_number_appear.items():
            outpu_appear+=[[level],[appear]]

        self.show_taxonomy_estimation(outpu_appear)

        self.generate_outpu_file(output,append=True)
        for taxon, list_scgs in dictonarry_presence.items():

Instances