9f91cdca1ec0877b10d221e70ec6cc3fb519e32c,skbio/io/fastq.py,,_fastq_to_generator,#Any#Any#Any#Any#,296

Before Change

                        constructor=BiologicalSequence):
    // SKip any blank or whitespace-only lines at beginning of file
    seq_header = ""
    for line in _line_generator(fh):
        seq_header = line
        if seq_header:
            break

    if seq_header:
        if not seq_header.startswith("@"):
            raise FASTQFormatError(
                "Expected sequence (@) header line at start of file: %r"

After Change

def _fastq_to_generator(fh, variant=None, phred_offset=None,
                        constructor=BiologicalSequence):
    // SKip any blank or whitespace-only lines at beginning of file
    seq_header = next(_line_generator(fh, skip_blanks=True))

    if not seq_header.startswith("@"):
        raise FASTQFormatError(
            "Expected sequence (@) header line at start of file: %r"

Instances