54ca329617d504d886a65fe8433949db5df00db7,atlas/report/qc_report.py,,,#,97

Before Change

    raise IndexError()

////// Combined report
Footer = \
    
    An internet connection is required to vizualize the interactive figures.
    

Combined_report = \
    
    ////////////////////////////////////////////////////////
    ATLAS quality control report
    ////////////////////////////////////////////////////////

 + Report_numbers + Report_read_quality_raw + Report_read_quality_qc + Footer

report(Combined_report, report_out, stylesheet=stylesheet, **report_params)

// remove ref directory which stores the genome used for _decontamination
if os.path.exists("ref"):
    shutil.rmtree("ref")

After Change

else:
    raise IndexError()

    report_str = 

.. raw:: html

    <script src="https://cdn.plot.ly/plotly-latest.min.js"></script>


=============================================================
ATLAS_ - QC Summary
=============================================================

.. _ATLAS: https://github.com/pnnl/atlas

.. contents::
    :backlinks: none


Summary
-------



Downloads
---------


    report(
        report_str,
        report_out,
        Table_1=combined_stats,
        stylesheet=os.path.join(
            os.path.abspath(os.path.dirname(__file__)), "report.css"
        ),
    )


if __name__ == "__main__":
    p = argparse.ArgumentParser()

Instances