ec4d077c5bd7e7d413c003ef5ed39cf4ced1f0f5,anvio/taxoestimation.py,SCGsTaxomy,estimate_taxonomy,#SCGsTaxomy#Any#,448

Before Change

                continue

            if self.metagenome or not self.profile_db_path:
                if str(list(taxonomy.values())[-1]) not in possibles_taxonomy and str(list(taxonomy.values())[-1]) :
                    possibles_taxonomy.append(str(list(taxonomy.values())[-1]))

                entries_db+=[(tuple([name,list(SCGs_hit_per_gene.keys())[0],source]+list(taxonomy.values())))]

After Change

            self.tables_for_taxonomy.taxonomy_estimation_to_profile(entries_db)


        with open(self.output_file_path,"w") as output:
            output_taxonomy=["\t".join(line) for line in possibles_taxonomy]
            output.write("\n".join(output_taxonomy))

        if anvio.DEBUG:
            self.show_taxonomy_estimation(possibles_taxonomy)

    def show_taxonomy_estimation(self, possibles_taxonomy):

Instances